Description
Developing promising treatments in biomedicine often requires aggregation and analysis of data from disparate sources across the healthcare and research spectrum. To facilitate these approaches, there is a growing focus on supporting interoperation of datasets by standardizing data-capture and reporting requirements. Common Data Elements (CDEs)—precise specifications of questions and the set of allowable answers to each question—are increasingly being adopted to help meet these standardization goals. While CDEs can provide a strong conceptual foundation for interoperation, there are no widely recognized serialization or interchange formats to describe and exchange their definitions. As a result, CDEs defined in one system cannot be easily be reused by other systems. An additional problem is that current CDE-based systems tend to be rather heavyweight and cannot be easily adopted and used by third-parties. To address these problems, we developed extensions to a metadata management system called the CEDAR Workbench to provide a platform to simplify the creation, exchange, and use of CDEs. We show how the resulting system allows users to quickly define and share CDEs and to immediately use these CDEs to build and deploy Web-based forms to acquire conforming metadata. We also show how we incorporated a large CDE library from the National Cancer Institute’s caDSR system and made these CDEs publicly available for general use.
Learning Objective: The reader will learn how common data elements (CDEs) can be used to facilitate the creation of standardized forms for data-collection and data reporting needs in biomedicine.
Authors:
Martin O’Connor (Presenter)
Stanford University
Denise Warzel, National Cancer Institute
Marcos Martínez-Romero, Stanford University
Josef Hardi, Stanford University
Debra Willrett, Stanford University
Aras Efekhari, Attain LLC
John Graybeal, Stanford University
Mark Musen, Stanford University
Presentation Materials: